Publications
Please note: Publications, posters or presentations that use services or data collected in the Core Unit and by its employees should list those contributions accordingly. Many Thanks.
2025[ to top ]
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“Junctional epithelial Plakoglobin facilitates intestinal inflammation by p38MAPK-dependent activation of the inflammasome”, Mucosal Immunology, Aug. 2025, doi: 10.1016/j.mucimm.2025.08.003.
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“Internal in-frame translation generates Cas11b, which is important for effective interference in an archaeal CRISPR-Cas system”, Frontiers in Microbiology, vol. 16, Feb. 2025, doi: 10.3389/fmicb.2025.1543464.
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“Neuronal toxicity and recovery from early bortezomib-induced neuropathy: blood-nerve barrier dysfunction without dorsal root ganglion damage”, British Journal of Anaesthesia, Aug. 2025, doi: 10.1016/j.bja.2025.05.046.
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“Platelets drive macrophage inflammatory activation in vitro”, Journal of Leukocyte Biology, Aug. 2025, doi: 10.1093/jleuko/qiaf114.
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“Ergosterol-depleted clinical isolates of Nakaseomyces glabratus can develop multi-drug resistance without apparent fitness and virulence defects”, bioRxiv, Cold Spring Harbor Laboratory, Aug. 2025. doi: 10.1101/2025.08.28.672802.
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“NGF stimulation alters the transcriptome and surface TrkB expression in axons of dorsal root ganglion neurons”, Neurobiology of Pain, vol. 18, p. 100194, Jul. 2025, doi: 10.1016/j.ynpai.2025.100194.
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“Programmable antisense oligomers for phage functional genomics”, Nature, Sep. 2025, doi: 10.1038/s41586-025-09499-6.
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“Resting Ca2+ fluxes protect cells from fast mitochondrial fragmentation, cell stress responses, and immediate transcriptional reprogramming”, Cellular and Molecular Life Sciences, vol. 82, no. 1, Art. no. 1, Jun. 2025, doi: 10.1007/s00018-025-05745-2.
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“Axon guidance deficits in a human sensory neuron model of Fabry disease”, bioRxiv, Cold Spring Harbor Laboratory, Sep. 05, 2025. doi: 10.1101/2025.09.01.673441.
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“Functional genomics of Campylobacter-host interactions in an intestinal tissue model reveals a small lipoprotein essential for flagellar assembly”, bioRxiv, Cold Spring Harbor Laboratory, Apr. 02, 2025. doi: 10.1101/2025.04.02.646747.
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“Emergence of transferable daptomycin resistance in Gram-positive bacteria”, npj Antimicrobials and Resistance, vol. 3, no. 1, Art. no. 1, Apr. 2025, doi: 10.1038/s44259-025-00109-z.
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“Provirus deletion from Haloferax volcanii affects motility, stress resistance, and CRISPR RNA expression”, microLife, vol. 6, May 2025, doi: 10.1093/femsml/uqaf008.
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“Transcriptome-scale analysis uncovers conserved residues in the hydrophobic core of the bacterial RNA chaperone Hfq required for small regulatory RNA stability”, Nucleic Acids Research, vol. 53, no. 3, Art. no. 3, Feb. 2025, doi: 10.1093/nar/gkaf019.
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“Peripheral nerve injury induces dystonia-like movements and dysregulation in the energy metabolism: A multi-omics descriptive study in Thap1+/− mice”, Neurobiology of Disease, vol. 205, p. 106783, Jan. 2025, doi: 10.1016/j.nbd.2024.106783.
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“Functional characterization of the DUF1127-containing small protein YjiS of Salmonella Typhimurium”, microLife, vol. 6, Jan. 2025, doi: 10.1093/femsml/uqae026.
2024[ to top ]
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“Atypical cellular responses mediated by intracellular constitutive active TrkB (NTRK2) kinase domains and a solely intracellular NTRK2-fusion oncogene”, Cancer Gene Therapy, Jul. 2024, doi: 10.1038/s41417-024-00809-0.
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“Cellular landscape of adrenocortical carcinoma at single-nuclei resolution”, Molecular and Cellular Endocrinology, vol. 590, p. 112272, Sep. 2024, doi: 10.1016/j.mce.2024.112272.
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“Drug efflux and lipid A modification by 4-L-aminoarabinose are key mechanisms of polymyxin B resistance in the sepsis pathogen Enterobacter bugandensis”, Journal of Global Antimicrobial Resistance, vol. 37, pp. 108–121, Jun. 2024, doi: 10.1016/j.jgar.2024.03.012.
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“Provirus deletion from Haloferax volcanii affects motility, stress resistance and CRISPR RNA expression”, bioRxiv, Cold Spring Harbor Laboratory, Oct. 11, 2024. doi: 10.1101/2024.10.11.617810.
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“Plekhg5 controls the unconventional secretion of Sod1 by presynaptic secretory autophagy”, Nature Communications, vol. 15, no. 1, Art. no. 1, Oct. 2024, doi: 10.1038/s41467-024-52875-5.
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“Peripheral blood cells enriched by adhesion to CYR61 are heterogenous myeloid modulators of tissue regeneration with early endothelial progenitor characteristics”, European Cells and Materials, vol. 48, pp. 66–92, Sep. 2024, doi: 10.22203/ecm.v048a05.
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“Transcriptome-scale analysis uncovers conserved residues in the hydrophobic core of the bacterial RNA chaperone Hfq required for small regulatory RNA stability”, bioRxiv, Sep. 2024, doi: 10.1101/2024.09.05.607192.
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“hnRNP R promotes O-GlcNAcylation of eIF4G and facilitates axonal protein synthesis”, Nature Communications, vol. 15, no. 1, Art. no. 1, Aug. 2024, doi: 10.1038/s41467-024-51678-y.
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“Inactivity of Stat3 in sensory and non-sensory cells of the mature cochlea”, Frontiers in Molecular Neuroscience, vol. 17, Oct. 2024, doi: 10.3389/fnmol.2024.1455136.
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“Satellite glial cells from adult DRG dedifferentiate in vitro and can be reprogrammed into nociceptor-like neurons”, bioRxiv, Apr. 2024, doi: 10.1101/2024.04.09.588701.
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“Clonal competition assays identify fitness signatures in cancer progression and resistance in multiple myeloma”, HemaSphere, vol. 8, no. 7, Art. no. 7, Jul. 2024, doi: 10.1002/hem3.110.
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“Single‐nucleus and spatial transcriptome reveal adrenal homeostasis in normal and tumoural adrenal glands”, Clinical and Translational Medicine, vol. 14, no. 8, Art. no. 8, Aug. 2024, doi: 10.1002/ctm2.1798.
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“Gene-environment interaction elicits dystonia-like features and impaired translational regulation in a DYT-TOR1A mouse model”, Neurobiology of Disease, p. 106453, Mar. 2024, doi: 10.1016/j.nbd.2024.106453.
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“Human dorsal root ganglia are either preserved or completely lost after deafferentation by brachial plexus injury”, British Journal of Anaesthesia, Oct. 2024, doi: 10.1016/j.bja.2024.09.004.
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“Circulating NK cells establish tissue residency upon acute infection of skin and mediate accelerated effector responses to secondary infection”, Immunity, vol. 57, no. 1, Art. no. 1, Jan. 2024, doi: https://doi.org/10.1016/j.immuni.2023.11.018.
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“Sequential antigen loss and branching evolution in lymphoma after CD19- and CD20-targeted T-cell–redirecting therapy”, Blood, vol. 143, no. 8, Art. no. 8, Feb. 2024, doi: 10.1182/blood.2023021672.
2023[ to top ]
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“Th17.1 cell driven sarcoidosis-like inflammation after anti-BCMA CAR T cells in multiple myeloma”, Leukemia, Jan. 2023, doi: 10.1038/s41375-023-01824-0.
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“Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery”, Nucleic Acids Research, vol. 52, no. 5, Art. no. 5, Dec. 2023, doi: 10.1093/nar/gkad1211.
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“Lymph node medulla regulates the spatiotemporal unfolding of resident dendritic cell networks”, Immunity, vol. 56, no. 8, Art. no. 8, Aug. 2023, doi: 10.1016/j.immuni.2023.06.020.
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“Vector-borne Trypanosoma brucei parasites develop in artificial human skin and persist as skin tissue forms”, Nature Communications, vol. 14, no. 1, Art. no. 1, Nov. 2023, doi: 10.1038/s41467-023-43437-2.
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“Identification of NOTCH-driven matrisome-associated genes as prognostic indicators of multiple myeloma patient survival”, Blood Cancer Journal, vol. 13, no. 1, Art. no. 1, Sep. 2023, doi: 10.1038/s41408-023-00907-6.
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“Endothelial barrier dysfunction in systemic inflammation is mediated by soluble VE-cadherin interfering VE-PTP signaling”, iScience, vol. 26, no. 10, Art. no. 10, Oct. 2023, doi: 10.1016/j.isci.2023.108049.
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“An interferon gamma response signature links myocardial aging and immunosenescence”, Cardiovascular Research, May 2023, doi: 10.1093/cvr/cvad068.
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“Microglia-mediated demyelination protects against CD8+ T cell-driven axon degeneration in mice carrying PLP defects”, Nature Communications, vol. 14, no. 1, Art. no. 1, Oct. 2023, doi: 10.1038/s41467-023-42570-2.
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“Myocardial Milieu Favors Local Differentiation of Regulatory T Cells”, Circulation Research, Feb. 2023, doi: 10.1161/circresaha.122.322183.
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“P-47 The role of immune cells in the brain-gut network in Parkinson’s Disease”, Clinical Neurophysiology, vol. 148, pp. e29–e30, Apr. 2023, doi: 10.1016/j.clinph.2023.02.064.
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“A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection”, Gut Microbes, vol. 15, no. 1, Art. no. 1, Mar. 2023, doi: 10.1080/19490976.2023.2186109.
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“Brain-to-gut trafficking of alpha-synuclein by CD11c+ cells in a mouse model of Parkinson’s disease”, Nature Communications, vol. 14, no. 1, Art. no. 1, Nov. 2023, doi: 10.1038/s41467-023-43224-z.
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“Cytotoxic CNS-associated Tcells drive axon degeneration by targeting perturbed oligodendrocytes in PLP1 mutant mice”, iScience, vol. 26, no. 5, Art. no. 5, May 2023, doi: 10.1016/j.isci.2023.106698.
2022[ to top ]
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“Spacer prioritization in CRISPR–Cas9 immunity is enabled by the leader RNA”, Nature Microbiology, Mar. 2022, doi: 10.1038/s41564-022-01074-3.
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“G6b-B regulates an essential step in megakaryocyte maturation”, Blood Advances, vol. 6, no. 10, Art. no. 10, May 2022, doi: 10.1182/bloodadvances.2021006151.
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“Liraglutide + PYY3-36 Combination Therapy Mimics Effects of Roux-en-Y Bypass on Early NAFLD Whilst Lacking-Behind in Metabolic Improvements”, Journal of Clinical Medicine, vol. 11, no. 3, Art. no. 3, Jan. 2022, doi: 10.3390/jcm11030753.
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“hnRNP R negatively regulates transcription by modulating the association of P-TEFb with 7SK and BRD4”, EMBO reports, p. e55432, Jul. 2022, doi: 10.15252/embr.202255432.
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“Type 1 conventional dendritic cells maintain and guide the differentiation of precursors of exhausted T~cells in distinct cellular niches”, Immunity, vol. 55, no. 4, Art. no. 4, Apr. 2022, doi: 10.1016/j.immuni.2022.03.006.
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“Stress signalling and STAT1 activation characterize the keratinocytic gene expression pattern in Hidradenitis suppurativa”, The Journal of the European Academy of Dermatology and Venereology, vol. 36, no. 12, Art. no. 12, Jul. 2022, doi: 10.1111/jdv.18465.
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“CD52 and OXPHOS—potential targets in ibrutinib-treated mantle cell lymphoma”, Cell Death Discovery, vol. 8, no. 1, Art. no. 1, Dec. 2022, doi: https://doi.org/10.1038/s41420-022-01289-7.
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“Neurodegeneration by α-synuclein-specific T cells in AAV-A53T-α-synuclein Parkinson’s disease mice”, Brain, Behavior, and Immunity, vol. 101, pp. 194–210, Jan. 2022, doi: https://doi.org/10.1016/j.bbi.2022.01.007.
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“Genome-wide scan for potential CD4+ T-cell vaccine candidates in Candida auris by exploiting reverse vaccinology and evolutionary information”, Frontiers in Medicine, vol. 9, p. 1008527, Nov. 2022, doi: 10.3389/fmed.2022.1008527.
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“Eine Einzelzell-RNA-Sequenzierung identifiziert Metabolismus und CD52 als neue Angriffspunkte in Ibrutinib-persistenten Mantelzelllymphomzellen”, Die Pathologie, Oct. 2022, doi: 10.1007/s00292-022-01136-7.
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“Temperature and livestock grazing trigger transcriptome responses in bumblebees along an elevational gradient”, iScience, vol. 25, no. 10, Art. no. 10, Oct. 2022, doi: 10.1016/j.isci.2022.105175.
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“Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+ stromal cell subsets”, Nature Communications, vol. 13, no. 1, Art. no. 1, Nov. 2022, doi: 10.1038/s41467-022-34868-4.
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“Helicobacter pylori shows tropism to gastric differentiated pit cells dependent on urea chemotaxis”, Nature Communications, vol. 13, no. 1, Art. no. 1, Oct. 2022, doi: 10.1038/s41467-022-33165-4.
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“Dynamics of monocyte-derived macrophage diversity in experimental myocardial infarction”, Cardiovascular Research, Aug. 2022, doi: 10.1093/cvr/cvac113.
2021[ to top ]
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“Accumulation of cytotoxic T cells in the aged CNS leads to axon degeneration and contributes to cognitive and motor decline”, Nature Aging, vol. 1, no. 4, Art. no. 4, Apr. 2021, doi: 10.1038/s43587-021-00049-z.
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“Alveolar Regeneration in COVID-19 Patients: A Network Perspective”, International Journal of Molecular Sciences, vol. 22, no. 20, Art. no. 20, Oct. 2021, doi: 10.3390/ijms222011279.
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“Fibromyalgia vs small fiber neuropathy: diverse keratinocyte transcriptome signature”, PAIN, vol. 162, pp. 2569–2577, Oct. 2021, doi: 10.1097/j.pain.0000000000002249.
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“The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR–Cas immune systems”, Nucleic Acids Research, vol. 49, no. 16, Art. no. 16, Aug. 2021, doi: 10.1093/nar/gkab704.
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“Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9”, Science, vol. 372, no. 6545, Art. no. 6545, Apr. 2021, doi: 10.1126/science.abe7106.
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“Homeostatic calcium fluxes, ER calcium release, SOCE, and calcium oscillations in cultured astrocytes are interlinked by a small calcium toolkit”, Cell Calcium, vol. 101, p. 102515, Dec. 2021, doi: 10.1016/j.ceca.2021.102515.
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“Homozygous BCMA gene deletion in response to anti-BCMA CAR T cells in a patient with multiple myeloma”, Nature Medicine, vol. 27, no. 4, Art. no. 4, Feb. 2021, doi: 10.1038/s41591-021-01245-5.
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“Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment”, International Journal of Molecular Sciences, vol. 22, no. 5, Art. no. 5, Feb. 2021, doi: 10.3390/ijms22052276.
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“Terminally Differentiated CD4+ T Cells Promote Myocardial Inflammaging”, Frontiers in Immunology, vol. 12, Feb. 2021, doi: 10.3389/fimmu.2021.584538.
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“MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT”, Cell Reports, vol. 34, no. 5, Art. no. 5, Feb. 2021, doi: 10.1016/j.celrep.2021.108722.
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“Roux-en-Y Gastric Bypass and Caloric Restriction but Not Gut Hormone-Based Treatments Profoundly Impact the Hypothalamic Transcriptome in Obese Rats”, Nutrients, vol. 14, no. 1, Art. no. 1, Dec. 2021, doi: 10.3390/nu14010116.
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“Opposing Wnt signals regulate cervical squamocolumnar homeostasis and emergence of metaplasia”, Nature Cell Biology, vol. 23, no. 2, Art. no. 2, Jan. 2021, doi: 10.1038/s41556-020-00619-0.
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“Effector differentiation downstream of lineage commitment in ILC1s is driven by Hobit across tissues”, Nature Immunology, vol. 22, no. 10, Art. no. 10, Aug. 2021, doi: 10.1038/s41590-021-01013-0.
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“The healing myocardium mobilizes a distinct B-cell subset through a CXCL13-CXCR5-dependent mechanism”, Cardiovascular Research, vol. 117, no. 13, Art. no. 13, May 2021, doi: 10.1093/cvr/cvab181.
2020[ to top ]
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“IL-12 from endogenous cDC1, and not vaccine DC, is required for Th1 induction”, JCI Insight, vol. 5, no. 10, Art. no. 10, May 2020, doi: 10.1172/jci.insight.135143.
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“Integrative functional genomics decodes herpes simplex virus 1”, Nature Communications, vol. 11, no. 1, Art. no. 1, Apr. 2020, doi: 10.1038/s41467-020-15992-5.
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“Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two-component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies”, MicrobiologyOpen, Nov. 2020, doi: 10.1002/mbo3.1138.
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“The Influence of Met Receptor Level on HGF-Induced Glycolytic Reprogramming in Head and Neck Squamous Cell Carcinoma”, International Journal of Molecular Sciences, vol. 21, no. 2, Art. no. 2, Jan. 2020, doi: 10.3390/ijms21020471.
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“Single-cell transcriptomic profiling maps monocyte/macrophage transitions after myocardial infarction in mice”, bioRxiv, Apr. 2020, doi: 10.1101/2020.04.14.040451.
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“Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads”, RNA, p. rna.075945.120, Apr. 2020, doi: 10.1261/rna.075945.120.
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“A Repeat-Associated Small RNA Controls the Major Virulence Factors of Helicobacter pylori”, Molecular Cell, Sep. 2020, doi: 10.1016/j.molcel.2020.09.009.
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“The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition”, Nature Communications, vol. 11, no. 1, Art. no. 1, Jun. 2020, doi: 10.1038/s41467-020-16650-6.
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“Dynamics of Cardiac Neutrophil Diversity in Murine Myocardial Infarction”, Circulation Research, Aug. 2020, doi: 10.1161/circresaha.120.317200.
2019[ to top ]
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“The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities”, PLOS Pathogens, vol. 15, no. 3, Art. no. 3, Mar. 2019, doi: 10.1371/journal.ppat.1007618.
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“Integrative functional genomics decodes herpes simplex virus 1”, bioRxiv, Apr. 2019, doi: 10.1101/603654.
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“Cognate Nonlytic Interactions between CD8+ T Cells and Breast Cancer Cells Induce Cancer Stem Cell–like Properties”, Cancer Research, vol. 79, no. 7, Art. no. 7, Apr. 2019, doi: 10.1158/0008-5472.CAN-18-0387.
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“Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq”, PLOS ONE, vol. 14, no. 4, Art. no. 4, Apr. 2019, doi: 10.1371/journal.pone.0215986.
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“scSLAM-seq reveals core features of transcription dynamics in single cells”, Nature, vol. 571, no. 7765, Art. no. 7765, Jul. 2019, doi: 10.1038/s41586-019-1369-y.
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“Hierarchy of mono- and biallelic TP53 alterations in multiple myeloma cell fitness”, Blood, vol. 134, no. 10, Art. no. 10, Sep. 2019, doi: 10.1182/blood.2019000080.
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“RAL GTPases mediate multiple myeloma cell survival and are activated independently of oncogenic RAS”, Haematologica, p. haematol.2019.223024, Oct. 2019, doi: 10.3324/haematol.2019.223024.
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“MicroRNA expression correlates with disease recurrence and overall survival in oral squamous cell carcinoma”, Journal of Cranio-Maxillofacial Surgery, vol. 47, no. 3, Art. no. 3, Mar. 2019, doi: 10.1016/j.jcms.2019.01.015.
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“Efficient depletion of ribosomal RNA for RNA sequencing in planarians”, BMC Genomics, vol. 20, no. 1, Art. no. 1, Nov. 2019, doi: 10.1186/s12864-019-6292-y.
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“Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing”, mSystems, vol. 4, no. 6, Art. no. 6, Dec. 2019, doi: 10.1128/mSystems.00590-19.
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“The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium”, mBio, vol. 10, no. 1, Art. no. 1, Feb. 2019, doi: 10.1128/mBio.02504-18.
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“Time-resolved single-cell transcriptomics uncovers dynamics of cardiac neutrophil diversity in murine myocardial infarction”, bioRxiv, Aug. 2019, doi: 10.1101/738005.
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“Identification of Cholecystokinin by Genome-Wide Profiling as Potential Mediator of Serotonin-Dependent Behavioral Effects of Maternal Separation in the Amygdala”, Frontiers in Neuroscience, vol. 13, May 2019, doi: 10.3389/fnins.2019.00460.
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“Contribution of LTi and TH17 cells to B cell aggregate formation in the central nervous system in a mouse model of multiple sclerosis”, Journal of Neuroinflammation, vol. 16, no. 1, Art. no. 1, May 2019, doi: 10.1186/s12974-019-1500-x.
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“Sensory profiles and immune-related expression patterns of patients with and without neuropathic pain after peripheral nerve lesion”, PAIN, vol. 160, no. 10, Art. no. 10, Oct. 2019, doi: 10.1097/j.pain.0000000000001623.
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“The identification of patient-specific mutations reveals dual pathway activation in most patients with melanoma and activated receptor tyrosine kinases in BRAF/NRAS wild-type melanomas”, Cancer, vol. 125, no. 4, Art. no. 4, Feb. 2019, doi: 10.1002/cncr.31843.
2018[ to top ]
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“Panel Sequencing Shows Recurrent Genetic FAS Alterations in Primary Cutaneous Marginal Zone Lymphoma”, Journal of Investigative Dermatology, vol. 138, no. 7, Art. no. 7, Jul. 2018, doi: 10.1016/j.jid.2018.02.015.
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“Clinical implications of fracture-associated vascular damage in extremity and pelvic trauma”, BMC Musculoskeletal Disorders, vol. 19, no. 1, Art. no. 1, Nov. 2018, doi: 10.1186/s12891-018-2333-y.
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“A New Bioactive Compound From the Marine Sponge-Derived Streptomyces sp. SBT348 Inhibits Staphylococcal Growth and Biofilm Formation”, Frontiers in Microbiology, vol. 9, Jul. 2018, doi: 10.3389/fmicb.2018.01473.
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“Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus”, Nucleic Acids Research, vol. 46, no. 20, Art. no. 20, Nov. 2018, doi: 10.1093/nar/gky765.
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“RNase E cleavage shapes the transcriptome of Rhodobacter sphaeroides and strongly impacts phototrophic growth”, Life Science Alliance, vol. 1, no. 4, Art. no. 4, Aug. 2018, doi: 10.26508/lsa.201800080.
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“Explorative results from multistep screening for potential genetic risk loci of Alzheimer’s disease in the longitudinal VITA study cohort”, Journal of Neural Transmission, vol. 125, no. 1, Art. no. 1, Jan. 2018, doi: 10.1007/s00702-017-1796-6.
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“A Novel Mechanism of Inactivating Antibacterial Nitro Compounds in the Human Pathogen Staphylococcus aureus by Overexpression of a NADH-Dependent Flavin Nitroreductase”, Antimicrobial Agents and Chemotherapy, vol. 62, no. 2, Art. no. 2, Feb. 2018, doi: 10.1128/AAC.01510-17.
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“The Probiotic Escherichia coli Strain Nissle 1917 Combats Lambdoid Bacteriophages stx and λ”, Frontiers in Microbiology, vol. 9, May 2018, doi: 10.3389/fmicb.2018.00929.
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“hnRNP R and its main interactor, the noncoding RNA 7SK, coregulate the axonal transcriptome of motoneurons”, Proceedings of the National Academy of Sciences, vol. 115, no. 12, Art. no. 12, Mar. 2018, doi: 10.1073/pnas.1721670115.
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“Genome organization and DNA accessibility control antigenic variation in trypanosomes”, Nature, vol. 563, no. 7729, Art. no. 7729, Oct. 2018, doi: 10.1038/s41586-018-0619-8.
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“Computational Analysis of RNA–Protein Interactions via Deep Sequencing”, in Transcriptome Data Analysis, in Methods in Molecular Biology. Humana Press, New York, NY, 2018, pp. 171–182. doi: 10.1007/978-1-4939-7710-9_12.
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“Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis”, Circulation Research, p. CIRCRESAHA.117.312509, Mar. 2018, doi: 10.1161/CIRCRESAHA.117.312509.
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“Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes”, Nature Communications, vol. 9, no. 1, Art. no. 1, Sep. 2018, doi: 10.1038/s41467-018-06423-7.
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“Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3′ Ends”, Molecular Cell, vol. 70, no. 5, Art. no. 5, Jun. 2018, doi: 10.1016/j.molcel.2018.04.017.
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“CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9”, Molecular Cell, vol. 69, no. 5, Art. no. 5, Mar. 2018, doi: 10.1016/j.molcel.2018.01.032.
2017[ to top ]
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“APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins”, Nucleic Acids Research, vol. 45, no. 11, Art. no. 11, Jun. 2017, doi: 10.1093/nar/gkx137.
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“GT‐rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes”, The EMBO Journal, vol. 36, no. 17, Art. no. 17, Sep. 2017, doi: 10.15252/embj.201695323.
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“Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches”, Frontiers in Microbiology, vol. 8, Oct. 2017, doi: 10.3389/fmicb.2017.01941.
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“The regulation of tetraspanin 8 gene expression—A potential new mechanism in the pathogenesis of bipolar disorder”, American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, vol. 174, no. 7, Art. no. 7, Aug. 2017, doi: 10.1002/ajmg.b.32571.
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“Hypermethylation of the non-imprinted maternal MEG3 and paternal MEST alleles is highly variable among normal individuals”, PLOS ONE, vol. 12, no. 8, Art. no. 8, Aug. 2017, doi: 10.1371/journal.pone.0184030.
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“Pan-Raf co-operates with PI3K-dependent signalling and critically contributes to myeloma cell survival independently of mutated RAS”, Leukemia, vol. 31, no. 4, Art. no. 4, Apr. 2017, doi: 10.1038/leu.2016.264.
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“Nimodipine fosters remyelination in a mouse model of multiple sclerosis and induces microglia-specific apoptosis”, Proceedings of the National Academy of Sciences, vol. 114, no. 16, Art. no. 16, Apr. 2017, doi: 10.1073/pnas.1620052114.
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“In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways”, Molecular Cell, vol. 65, no. 1, Art. no. 1, Jan. 2017, doi: 10.1016/j.molcel.2016.11.002.
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“An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides”, Journal of Bacteriology, vol. 199, no. 14, Art. no. 14, Jul. 2017, doi: 10.1128/JB.00249-17.
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“Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches”, Frontiers in Microbiology, vol. 8, Oct. 2017, doi: 10.3389/fmicb.2017.01941.
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“Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis”, Biological Psychiatry, vol. 82, no. 9, Art. no. 9, Nov. 2017, doi: 10.1016/j.biopsych.2016.08.040.
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