Publications
Please note: Publications, posters or presentations that use services or data collected in the Core Unit and by its employees should list those contributions accordingly. Many Thanks.
2023[ to top ]
-
Genome-wide scan for potential CD4+ T-cell vaccine candidates in Candida auris by exploiting reverse vaccinology and evolutionary information in Frontiers in Medicine (2023). 9 1008527.
-
Myocardial Milieu Favors Local Differentiation of Regulatory T Cells in Circulation Research (2023).
-
Th17.1 cell driven sarcoidosis-like inflammation after anti-{BCMA} {CAR} T cells in multiple myeloma in Leukemia (2023).
2022[ to top ]
-
CD52 and OXPHOS—potential targets in ibrutinib-treated mantle cell lymphoma in Cell Death Discovery (2022). 8(1) 505.
-
Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+ stromal cell subsets in Nature Communications (2022). 13(1)
-
Temperature and livestock grazing trigger transcriptome responses in bumblebees along an elevational gradient in iScience (2022). 25(10)
-
Eine Einzelzell-{RNA}-Sequenzierung identifiziert Metabolismus und {CD}52 als neue Angriffspunkte in Ibrutinib-persistenten Mantelzelllymphomzellen in Die Pathologie (2022).
-
Helicobacter pylori shows tropism to gastric differentiated pit cells dependent on urea chemotaxis in Nature Communications (2022). 13(1) 5878.
-
Dynamics of monocyte-derived macrophage diversity in experimental myocardial infarction in Cardiovascular Research (2022).
-
hnRNP R negatively regulates transcription by modulating the association of P-TEFb with 7SK and BRD4 in EMBO reports (2022). e55432.
-
Type 1 conventional dendritic cells maintain and guide the differentiation of precursors of exhausted T~cells in distinct cellular niches in Immunity (2022). 55(4) 656–670.e8.
-
Spacer prioritization in CRISPR–Cas9 immunity is enabled by the leader RNA in Nature Microbiology (2022).
-
Liraglutide + PYY3-36 Combination Therapy Mimics Effects of Roux-en-Y Bypass on Early NAFLD Whilst Lacking-Behind in Metabolic Improvements in Journal of Clinical Medicine (2022). 11(3) 753.
-
Homeostatic calcium fluxes, {ER} calcium release, {SOCE}, and calcium oscillations in cultured astrocytes are interlinked by a small calcium toolkit in Cell Calcium (2022). 101 102515.
-
Neurodegeneration by α-synuclein-specific T cells in AAV-A53T-α-synuclein Parkinson’s disease mice in Brain, Behavior, and Immunity (2022).
2021[ to top ]
-
Alveolar Regeneration in COVID-19 Patients: A Network Perspective in International Journal of Molecular Sciences (2021). 22(20) 11279.
-
Stress signalling and STAT1 activation characterize the keratinocytic gene expression pattern in Hidradenitis suppurativa in The Journal of the European Academy of Dermatology and Venereology (2021). 36(12) 2488–2498.
-
Roux-en-Y Gastric Bypass and Caloric Restriction but Not Gut Hormone-Based Treatments Profoundly Impact the Hypothalamic Transcriptome in Obese Rats in Nutrients (2021). 14(1) 116.
-
Fibromyalgia vs small fiber neuropathy: diverse keratinocyte transcriptome signature in PAIN (2021). 162 2569–2577.
-
{The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR–Cas immune systems} in Nucleic Acids Research (2021).
-
Effector differentiation downstream of lineage commitment in {ILC}1s is driven by Hobit across tissues in Nature Immunology (2021). 22(10) 1256–1267.
-
The healing myocardium mobilizes a distinct B-cell subset through a {CXCL}13-{CXCR}5-dependent mechanism in Cardiovascular Research (2021).
-
Accumulation of cytotoxic T cells in the aged {CNS} leads to axon degeneration and contributes to cognitive and motor decline in Nature Aging (2021). 1(4) 357–367.
-
Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9 in Science (2021).
-
Terminally Differentiated CD4+ T Cells Promote Myocardial Inflammaging in Frontiers in Immunology (2021). 12
-
{MAPS} integrates regulation of actin-targeting effector {SteC} into the virulence control network of Salmonella small {RNA} {PinT} in Cell Reports (2021). 34(5) 108722.
-
Homozygous {BCMA} gene deletion in response to anti-{BCMA} {CAR} T cells in a patient with multiple myeloma in Nature Medicine (2021).
-
Time-Resolved {scRNA}-Seq Tracks the Adaptation of a Sensitive {MCL} Cell Line to Ibrutinib Treatment in International Journal of Molecular Sciences (2021). 22(5) 2276.
-
Opposing Wnt signals regulate cervical squamocolumnar homeostasis and emergence of metaplasia in Nature Cell Biology (2021). 23(2) 184–197.
2020[ to top ]
-
Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two-component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies in {MicrobiologyOpen} (2020).
-
A Repeat-Associated Small {RNA} Controls the Major Virulence Factors of Helicobacter pylori in Molecular Cell (2020).
-
Dynamics of Cardiac Neutrophil Diversity in Murine Myocardial Infarction in Circulation Research (2020).
-
The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition in Nature Communications (2020). 11(1) 2823-.
-
{IL}-12 from endogenous {cDC}1, and not vaccine {DC}, is required for Th1 induction in {JCI} Insight (2020). 5(10)
-
Single-cell transcriptomic profiling maps monocyte/macrophage transitions after myocardial infarction in mice in bioRxiv (2020).
-
Improved bacterial {RNA}-seq by Cas9-based depletion of ribosomal {RNA} reads in {RNA} (2020). rna.075945.120.
-
Integrative functional genomics decodes herpes simplex virus 1 in Nature Communications (2020). 11(1) 2038-.
-
The Influence of Met Receptor Level on {HGF}-Induced Glycolytic Reprogramming in Head and Neck Squamous Cell Carcinoma in International Journal of Molecular Sciences (2020). 21(2) 471.
2019[ to top ]
-
Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing in mSystems (2019). 4(6)
-
Efficient depletion of ribosomal RNA for RNA sequencing in planarians in BMC Genomics (2019). 20(1) 909.
-
{RAL} {GTPases} mediate multiple myeloma cell survival and are activated independently of oncogenic {RAS} in Haematologica (2019). haematol.2019.223024.
-
Sensory profiles and immune-related expression patterns of patients with and without neuropathic pain after peripheral nerve lesion in {PAIN} (2019). 160(10) 2316–2327.
-
Hierarchy of mono- and biallelic {TP}53 alterations in multiple myeloma cell fitness in Blood (2019). 134(10) 836–840.
- [ DOI ]
-
Time-resolved single-cell transcriptomics uncovers dynamics of cardiac neutrophil diversity in murine myocardial infarction in bioRxiv (2019).
-
{scSLAM}-seq reveals core features of transcription dynamics in single cells in Nature (2019). 571(7765) 419–423.
-
Identification of Cholecystokinin by Genome-Wide Profiling as Potential Mediator of Serotonin-Dependent Behavioral Effects of Maternal Separation in the Amygdala in Frontiers in Neuroscience (2019). 13
-
Contribution of {LTi} and {TH}17 cells to {B} cell aggregate formation in the central nervous system in a mouse model of multiple sclerosis in Journal of Neuroinflammation (2019). 16(1) 111.
-
Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq in PLOS ONE (2019). 14(4) 1–24.
-
Integrative functional genomics decodes herpes simplex virus 1 in bioRxiv (2019).
-
Cognate {Nonlytic} {Interactions} between {CD}8+ {T} {Cells} and {Breast} {Cancer} {Cells} {Induce} {Cancer} {Stem} {Cell}–like {Properties} in Cancer Research (2019). 79(7) 1507–1519.
-
The small non-coding {RNA} {RsaE} influences extracellular matrix composition in {Staphylococcus} epidermidis biofilm communities in PLOS Pathogens (2019). 15(3) e1007618.
-
{MicroRNA} expression correlates with disease recurrence and overall survival in oral squamous cell carcinoma in Journal of Cranio-Maxillofacial Surgery (2019). 47(3) 523–529.
-
The identification of patient-specific mutations reveals dual pathway activation in most patients with melanoma and activated receptor tyrosine kinases in {BRAF}/{NRAS} wild-type melanomas in Cancer (2019). 125(4) 586–600.
-
The {Major} {RNA}-{Binding} {Protein} {ProQ} {Impacts} {Virulence} {Gene} {Expression} in {Salmonella} enterica {Serovar} {Typhimurium} in mBio (2019). 10(1) e02504–18.
2018[ to top ]
-
Clinical implications of fracture-associated vascular damage in extremity and pelvic trauma in BMC Musculoskeletal Disorders (2018). 19(1) 404.
-
Post-transcriptional gene regulation by an {Hfq}-independent small {RNA} in {Caulobacter} crescentus in Nucleic Acids Research (2018). 46(20) 10969–10982.
-
Genome organization and {DNA} accessibility control antigenic variation in trypanosomes in Nature (2018). 563(7729) 121–125.
-
Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes in Nature Communications (2018). 9(1)
-
{RNase} {E} cleavage shapes the transcriptome of {Rhodobacter} sphaeroides and strongly impacts phototrophic growth in Life Science Alliance (2018). 1(4) e201800080.
-
Panel {Sequencing} {Shows} {Recurrent} {Genetic} {FAS} {Alterations} in {Primary} {Cutaneous} {Marginal} {Zone} {Lymphoma} in Journal of Investigative Dermatology (2018). 138(7) 1573–1581.
-
A New Bioactive Compound From the Marine Sponge-Derived Streptomyces sp. {SBT}348 Inhibits Staphylococcal Growth and Biofilm Formation in Frontiers in Microbiology (2018). 9
-
Global {Maps} of {ProQ} {Binding} {In} {Vivo} {Reveal} {Target} {Recognition} via {RNA} {Structure} and {Stability} {Control} at {mRNA} 3′ {Ends} in Molecular Cell (2018). 70(5) 971–982.e6.
-
The {Probiotic} {Escherichia} coli {Strain} {Nissle} 1917 {Combats} {Lambdoid} {Bacteriophages} stx and λ in Frontiers in Microbiology (2018). 9
-
{CRISPR} {RNA}-{Dependent} {Binding} and {Cleavage} of {Endogenous} {RNAs} by the {Campylobacter} jejuni {Cas}9 in Molecular Cell (2018). 69(5) 893–905.e7.
-
Single-{Cell} {RNA}-{Seq} {Reveals} the {Transcriptional} {Landscape} and {Heterogeneity} of {Aortic} {Macrophages} in {Murine} {Atherosclerosis} in Circulation Research (2018). CIRCRESAHA.117.312509.
-
Computational {Analysis} of {RNA}–{Protein} {Interactions} via {Deep} {Sequencing} in Transcriptome {Data} {Analysis} (2018). 171–182.
-
{hnRNP} {R} and its main interactor, the noncoding {RNA} 7SK, coregulate the axonal transcriptome of motoneurons in Proceedings of the National Academy of Sciences (2018). 115(12) E2859-E2868.
-
A {Novel} {Mechanism} of {Inactivating} {Antibacterial} {Nitro} {Compounds} in the {Human} {Pathogen} {Staphylococcus} aureus by {Overexpression} of a {NADH}-{Dependent} {Flavin} {Nitroreductase} in Antimicrobial Agents and Chemotherapy (2018). 62(2) e01510–17.
-
Explorative results from multistep screening for potential genetic risk loci of Alzheimer’s disease in the longitudinal VITA study cohort in Journal of Neural Transmission (2018). 125(1) 77–87.
2017[ to top ]
-
{sRNA}154 a newly identified regulator of nitrogen fixation in {Methanosarcina} mazei strain {Gö}1 in RNA Biology (2017). 14(11) 1544–1558.
-
Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis in Biological Psychiatry (2017). 82(9) 634–641.
-
Insights into {Microalga} and {Bacteria} {Interactions} of {Selected} {Phycosphere} {Biofilms} {Using} {Metagenomic}, {Transcriptomic}, and {Proteomic} {Approaches} in Frontiers in Microbiology (2017). 8
-
Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches in Frontiers in Microbiology (2017). 8
-
{GT}‐rich promoters can drive {RNA} pol {II} transcription and deposition of {H}2A.{Z} in {African} trypanosomes in The EMBO Journal (2017). 36(17) 2581–2594.
-
Hypermethylation of the non-imprinted maternal MEG3 and paternal MEST alleles is highly variable among normal individuals in PLOS ONE (2017). 12(8) 1–16.
-
The enteric nervous system is a potential autoimmune target in multiple sclerosis in Acta Neuropathologica (2017). 134(2) 281–295.
-
The regulation of tetraspanin 8 gene expression—{A} potential new mechanism in the pathogenesis of bipolar disorder in American Journal of Medical Genetics Part B: Neuropsychiatric Genetics (2017). 174(7) 740–750.
-
The glucocorticoid receptor in monocyte-derived macrophages is critical for cardiac infarct repair and remodeling in The FASEB Journal (2017). 31(11) 5122–5132.
-
An {RpoHI}-{Dependent} {Response} {Promotes} {Outgrowth} after {Extended} {Stationary} {Phase} in the {Alphaproteobacterium} {Rhodobacter} sphaeroides in Journal of Bacteriology (2017). 199(14) e00249–17.
-
Differential effects of {FTY}720 on the {B} cell compartment in a mouse model of multiple sclerosis in Journal of Neuroinflammation (2017). 14 148.
-
{dRNA}-seq transcriptional profiling of the {FK}506 biosynthetic gene cluster in Streptomyces tsukubaensis {NRRL}18488 and general analysis of the transcriptome in {RNA} Biology (2017). 14(11) 1617–1626.
-
{APRICOT}: an integrated computational pipeline for the sequence-based identification and characterization of {RNA}-binding proteins in Nucleic Acids Research (2017). 45(11) e96-e96.
-
Pan-{Raf} co-operates with {PI}3K-dependent signalling and critically contributes to myeloma cell survival independently of mutated {RAS} in Leukemia (2017). 31(4) 922–933.
-
Nimodipine fosters remyelination in a mouse model of multiple sclerosis and induces microglia-specific apoptosis in Proceedings of the National Academy of Sciences (2017). 114(16) E3295-E3304.
-
Transcription {Profiling} of {Bacillus} subtilis {Cells} {Infected} with {AR}9, a {Giant} {Phage} {Encoding} {Two} {Multisubunit} {RNA} {Polymerases} in mBio (2017). 8(1) e02041–16.
-
In {Vivo} {Cleavage} {Map} {Illuminates} the {Central} {Role} of {RNase} {E} in {Coding} and {Non}-coding {RNA} {Pathways} in Molecular Cell (2017). 65(1) 39–51.