Deutsch Intern
Core Unit Systems Medicine

Publications

Please note: Publications, posters or presentations that use services or data collected in the Core Unit and by its employees should list those contributions accordingly. Many Thanks.

2024[ to top ]
  • hnRNP R promotes O-GlcNAcylation of eIF4G and facilitates axonal protein synthesis. Zare, Abdolhossein; Salehi, Saeede; Bader, Jakob; Schneider, Cornelius; Fischer, Utz; Veh, Alexander; Arampatzi, Panagiota; Mann, Matthias; Briese, Michael; Sendtner, Michael. In Nature Communications, 15(1), p. 7430. 2024.
  • Transcriptome-scale analysis uncovers conserved residues in the hydrophobic core of the bacterial RNA chaperone Hfq required for small regulatory RNA stability. McQuail, Josh; Krepl, Miroslav; Katsuya-Gaviria, Kai; Tabib-Salazar, Aline; Burchell, Lynn; Bischler, Thorsten; Gräfenhan, Tom; Brear, Paul; Šponer, Jiří; Luisi, Ben F.; Wigneshweraraj, Sivaramesh. In bioRxiv. Cold Spring Harbor Laboratory, 2024.
  • Internal in-frame translation generates Cas11b, which is important for effective interference in an archaeal CRISPR-Cas system. Sailer, A.-L.; Brendel, J.; Chernev, A.; König, S.; Bischler, T.; Gräfenhan, T.; Urlaub, H.; Gophna, U.; Marchfelder, A. In bioRxiv. Cold Spring Harbor Laboratory, 2024.
  • Human dorsal root ganglia are either preserved or completely lost after deafferentation by brachial plexus injury. Sodmann, Annemarie; Degenbeck, Johannes; Aue, Annemarie; Schindehütte, Magnus; Schlott, Felicitas; Arampatzi, Panagiota; Bischler, Thorsten; Schneider, Max; Brack, Alexander; Monoranu, Camelia M.; Gräfenhan, Tom; Bohnert, Michael; Pham, Mirko; Antoniadis, Gregor; Blum, Robert; Rittner, Heike L. In British Journal of Anaesthesia. Elsevier BV, 2024.
  • Neuronal toxicity and recovery from early bortezomib-induced neuropathy: targeting the blood nerve barrier but not the dorsal root ganglion. Atalla, Mariam Sobhy; Bettenhausen, Anna-Lena; Verse, Julius M.; Cebulla, Nadine; Krug, Susanne M.; Sauer, Reine-Solange; Srivastava, Mugdha; Bischler, Thorsten; Chen, Jeremy T.C.; Kortüm, K. Martin; Kittel, Robert J.; Sommer, Claudia; Rittner, Heike L. In bioRxiv. Cold Spring Harbor Laboratory, 2024.
  • Cellular landscape of adrenocortical carcinoma at single-nuclei resolution. Tourigny, David S.; Altieri, Barbara; Secener, Kerim A.; Sbiera, Silviu; Schauer, Marc P.; Arampatzi, Panagiota; Herterich, Sabine; Sauer, Sascha; Fassnacht, Martin; Ronchi, Cristina L. In Molecular and Cellular Endocrinology, 590, p. 112272. Elsevier BV, 2024.
  • Plekhg5 controls the unconventional secretion of Sod1 by presynaptic secretory autophagy. Hutchings, Amy-Jayne; Hambrecht, Bita; Veh, Alexander; Giridhar, Neha Jadhav; Zare, Abdolhossein; Angerer, Christina; Ohnesorge, Thorben; Schenke, Maren; Selvaraj, Bhuvaneish T.; Chandran, Siddharthan; Sterneckert, Jared; Petri, Susanne; Seeger, Bettina; Briese, Michael; Stigloher, Christian; Bischler, Thorsten; Hermann, Andreas; Damme, Markus; Sendtner, Michael; Lüningschrör, Patrick. In Nature Communications, 15(1), p. 8622. 2024.
  • Gene-environment interaction elicits dystonia-like features and impaired translational regulation in a DYT-TOR1A mouse model. Reinhold, Colette; Knorr, Susanne; McFleder, Rhonda L.; Rauschenberger, Lisa; Muthuraman, Muthuraman; Arampatzi, Panagiota; Gräfenhan, Tom; Schlosser, Andreas; Sendtner, Michael; Volkmann, Jens; Ip, Chi Wang. In Neurobiology of Disease, p. 106453. Elsevier BV, 2024.
  • Single‐nucleus and spatial transcriptome reveal adrenal homeostasis in normal and tumoural adrenal glands. Altieri, Barbara; Secener, A. Kerim; Sai, Somesh; Fischer, Cornelius; Sbiera, Silviu; Arampatzi, Panagiota; Kircher, Stefan; Herterich, Sabine; Landwehr, Laura‐Sophie; Vitcetz, Sarah N.; Braeuning, Caroline; Fassnacht, Martin; Ronchi, Cristina L.; Sauer, Sascha. In Clinical and Translational Medicine, 14(8). Wiley, 2024.
  • Inactivity of Stat3 in sensory and non-sensory cells of the mature cochlea. Bieniussa, Linda; Stolte, Clara; Engert, Jonas; Arampatzi, Panagiota; Völker, Johannes; Hagen, Rudolf; Hackenberg, Stephan; Rak, Kristen. In Frontiers in Molecular Neuroscience, 17. 2024.
  • Sequential antigen loss and branching evolution in lymphoma after CD19- and CD20-targeted T-cell–redirecting therapy. Duell, Johannes; Leipold, Alexander M.; Appenzeller, Silke; Fuhr, Viktoria; Rauert-Wunderlich, Hilka; Da Via, Matteo; Dietrich, Oliver; Toussaint, Christophe; Imdahl, Fabian; Eisele, Florian; Afrin, Nazia; Grundheber, Lars; Einsele, Hermann; Weinhold, Niels; Rosenwald, Andreas; Topp, Max S.; Saliba, Antoine-Emmanuel; Rasche, Leo. In Blood, 143(8), pp. 685–696. 2024.
  • Clonal competition assays identify fitness signatures in cancer progression and resistance in multiple myeloma. Haertle, Larissa; Munawar, Umair; Hernández, Hipólito N. C.; Arroyo‐Barea, Andres; Heckel, Tobias; Cuenca, Isabel; Martin, Lucia; Höschle, Carlotta; Müller, Nicole; Vogt, Cornelia; Bischler, Thorsten; del Campo, Paula L.; Han, Seungbin; Buenache, Natalia; Zhou, Xiang; Bassermann, Florian; Waldschmidt, Johannes; Steinbrunn, Torsten; Rasche, Leo; Stühmer, Thorsten; Martinez‐Lopez, Joaquin; Martin Kortüm, K.; Barrio, Santiago. In HemaSphere, 8(7). Wiley, 2024.
  • Atypical cellular responses mediated by intracellular constitutive active TrkB (NTRK2) kinase domains and a solely intracellular NTRK2-fusion oncogene. Gupta, Rohini; Dittmeier, Melanie; Wohlleben, Gisela; Nickl, Vera; Bischler, Thorsten; Luzak, Vanessa; Wegat, Vanessa; Doll, Dennis; Sodmann, Annemarie; Bady, Elena; Langlhofer, Georg; Wachter, Britta; Havlicek, Steven; Gupta, Jahnve; Horn, Evi; Lüningschrör, Patrick; Villmann, Carmen; Polat, Bülent; Wischhusen, Jörg; Monoranu, Camelia M.; Kuper, Jochen; Blum, Robert. In Cancer Gene Therapy. 2024.
  • Provirus deletion from Haloferax volcanii affects motility, stress resistance and CRISPR RNA expression. Di Cianni, Nadia; Bolsinger, Simon; Brendel, Jutta; Raabe, Monika; Koenig, Sabine; Mitchell, Laura; Bischler, Thorsten; Gräfenhan, Tom; Read, Clarissa; Erdmann, Susanne; Allers, Thorsten; Walther, Paul; Urlaub, Henning; Dyall-Smith, Mike; Pfeiffer, Friedhelm; Marchfelder, Anita. In bioRxiv. Cold Spring Harbor Laboratory, 2024.
  • Circulating NK cells establish tissue residency upon acute infection of skin and mediate accelerated effector responses to secondary infection. Torcellan, Tommaso; Friedrich, Christin; Doucet-Ladevèze, Rémi; Ossner, Thomas; Solé, Virgínia Visaconill; Riedmann, Sofie; Ugur, Milas; Imdahl, Fabian; Rosshart, Stephan P.; Arnold, Sebastian J.; Gomez de Agüero, Mercedes; Gagliani, Nicola; Flavell, Richard A.; Backes, Simone; Kastenmüller, Wolfgang; Gasteiger, Georg. In Immunity, 57(1), pp. 124–140.e7. 2024.
  • Satellite glial cells from adult DRG dedifferentiate in vitro and can be reprogrammed into nociceptor-like neurons. Sodmann, Annemarie; Köhler, Niels; Esfahani, Nastaran M.; Schukraft, Nina; Aue, Annemarie; Jager, Sara E.; Bischler, Thorsten; Imdahl, Fabian; Gräfenhan, Tom; Leipold, Enrico; Rittner, Heike L.; Blum, Robert. In bioRxiv. Cold Spring Harbor Laboratory, 2024.
2023[ to top ]
  • Microglia-mediated demyelination protects against CD8+ T cell-driven axon degeneration in mice carrying PLP defects. Groh, Janos; Abdelwahab, Tassnim; Kattimani, Yogita; Hörner, Michaela; Loserth, Silke; Gudi, Viktoria; Adalbert, Robert; Imdahl, Fabian; Saliba, Antoine-Emmanuel; Coleman, Michael; Stangel, Martin; Simons, Mikael; Martini, Rudolf. In Nature Communications, 14(1), p. 6911. 2023.
  • Cytotoxic CNS-associated Tcells drive axon degeneration by targeting perturbed oligodendrocytes in PLP1 mutant mice. Abdelwahab, Tassnim; Stadler, David; Knöpper, Konrad; Arampatzi, Panagiota; Saliba, Antoine-Emmanuel; Kastenmüller, Wolfgang; Martini, Rudolf; Groh, Janos. In iScience, 26(5), p. 106698. Elsevier BV, 2023.
  • An interferon gamma response signature links myocardial aging and immunosenescence. Ashour, DiyaaElDin; Rebs, Sabine; Arampatzi, Panagiota; Saliba, Antoine-Emmanuel; Dudek, Jan; Schulz, Richard; Hofmann, Ulrich; Frantz, Stefan; Cochain, Clément; Streckfuß-Bömeke, Katrin; Ramos, Gustavo Campos. In Cardiovascular Research. Oxford University Press (OUP), 2023.
  • Lymph node medulla regulates the spatiotemporal unfolding of resident dendritic cell networks. Ugur, Milas; Labios, R. Jacob; Fenton, Chloe; Knöpper, Konrad; Jobin, Katarzyna; Imdahl, Fabian; Golda, Gosia; Hoh, Kathrin; Grafen, Anika; Kaisho, Tsuneyasu; Saliba, Antoine-Emmanuel; Grün, Dominic; Gasteiger, Georg; Bajénoff, Marc; Kastenmüller, Wolfgang. In Immunity, 56(8), pp. 1778–1793.e10. Elsevier BV, 2023.
  • Endothelial barrier dysfunction in systemic inflammation is mediated by soluble VE-cadherin interfering VE-PTP signaling. Knop, Juna-Lisa; Burkard, Natalie; Danesh, Mahshid; Kintrup, Sebastian; Dandekar, Thomas; Srivastava, Mugdha; Springer, Rebecca; Hiermaier, Matthias; Wagner, Nana-Maria; Waschke, Jens; Flemming, Sven; Schlegel, Nicolas. In iScience, 26(10), p. 108049. Elsevier BV, 2023.
  • P-47 The role of immune cells in the brain-gut network in Parkinson’s Disease. McFleder, R.; Makhotkina, A.; Groh, J.; Alina, P.; Imdahl, F.; Vogel, J.; Volkmann, J.; Saliba, A.; Ip, C.W. In Clinical Neurophysiology, 148, pp. e29–e30. Elsevier BV, 2023.
  • Vector-borne Trypanosoma brucei parasites develop in artificial human skin and persist as skin tissue forms. Reuter, Christian; Hauf, Laura; Imdahl, Fabian; Sen, Rituparno; Vafadarnejad, Ehsan; Fey, Philipp; Finger, Tamara; Jones, Nicola G.; Walles, Heike; Barquist, Lars; Saliba, Antoine-Emmanuel; Groeber-Becker, Florian; Engstler, Markus. In Nature Communications, 14(1), p. 7660. 2023.
  • A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection. Däullary, Thomas; Imdahl, Fabian; Dietrich, Oliver; Hepp, Laura; Krammer, Tobias; Fey, Christina; Neuhaus, Winfried; Metzger, Marco; Vogel, Jörg; Westermann, Alexander J.; Saliba, Antoine-Emmanuel; Zdzieblo, Daniela. In Gut Microbes, 15(1). Informa UK Limited, 2023.
  • Myocardial Milieu Favors Local Differentiation of Regulatory T Cells. Delgobo, Murilo; Weiß, Emil; Ashour, Diyaa ElDin; Richter, Leon; Popiolkowski, Lisa; Arampatzi, Panagiota; Stangl, Verena; Arias-Loza, Paula; Mariotti-Ferrandiz, Encarnita; Rainer, Peter P.; Saliba, Antoine-Emmanuel; Ludewig, Burkhard; Hofmann, Ulrich; Frantz, Stefan; Ramos, Gustavo Campos. In Circulation Research. Ovid Technologies (Wolters Kluwer Health), 2023.
  • Identification of NOTCH-driven matrisome-associated genes as prognostic indicators of multiple myeloma patient survival. Maichl, Daniela Simone; Kirner, Julius Arthur; Beck, Susanne; Cheng, Wen-Hui; Krug, Melanie; Kuric, Martin; Ade, Carsten Patrick; Bischler, Thorsten; Jakob, Franz; Hose, Dirk; Seckinger, Anja; Ebert, Regina; Jundt, Franziska. In Blood Cancer Journal, 13(1), pp. 1–6. 2023.
  • Th17.1 cell driven sarcoidosis-like inflammation after anti-BCMA CAR T cells in multiple myeloma. Leipold, Alexander M.; Werner, Rudolf A.; Düll, Johannes; Jung, Pius; John, Mara; Stanojkovska, Emilia; Zhou, Xiang; Hornburger, Hannah; Ruckdeschel, Anna; Dietrich, Oliver; Imdahl, Fabian; Krammer, Tobias; Knop, Stefan; Rosenwald, Andreas; Buck, Andreas; Sander, Leif Erik; Einsele, Hermann; Kortüm, K. Martin; Saliba, Antoine-Emmanuel; Rasche, Leo. In Leukemia. Springer Science and Business Media LLC, 2023.
  • Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery. McQuail, Josh; Matera, Gianluca; Gräfenhan, Tom; Bischler, Thorsten; Haberkant, Per; Stein, Frank; Vogel, Jörg; Wigneshweraraj, Sivaramesh. In Nucleic Acids Research, 52(5), pp. 2323–2339. 2023.
  • Brain-to-gut trafficking of alpha-synuclein by CD11c+ cells in a mouse model of Parkinson’s disease. McFleder, Rhonda L.; Makhotkina, Anastasiia; Groh, Janos; Keber, Ursula; Imdahl, Fabian; Peña Mosca, Josefina; Peteranderl, Alina; Wu, Jingjing; Tabuchi, Sawako; Hoffmann, Jan; Karl, Ann-Kathrin; Pagenstecher, Axel; Vogel, Jörg; Beilhack, Andreas; Koprich, James B.; Brotchie, Jonathan M.; Saliba, Antoine-Emmanuel; Volkmann, Jens; Ip, Chi Wang. In Nature Communications, 14(1), p. 7529. 2023.
2022[ to top ]
  • CD52 and OXPHOS—potential targets in ibrutinib-treated mantle cell lymphoma. Fuhr, Viktoria; Heidenreich, Shanice; Srivastava, Mugdha; Riedel, Angela; Düll, Johannes; Gerhard-Hartmann, Elena; Rosenwald, Andreas; Rauert-Wunderlich, Hilka. In Cell Death Discovery, 8(1), p. 505. 2022.
  • Stress signalling and STAT1 activation characterize the keratinocytic gene expression pattern in Hidradenitis suppurativa. Frings, V G; Jopp, L; Srivastava, M; Presser, D; Goebeler, M; Schmidt, M. In The Journal of the European Academy of Dermatology and Venereology, 36(12), pp. 2488–2498. 2022.
  • hnRNP R negatively regulates transcription by modulating the association of P-TEFb with 7SK and BRD4. Ji, Changhe; Deng, Chunchu; Antor, Katharina; Bischler, Thorsten; Schneider, Cornelius; Fischer, Utz; Sendtner, Michael; Briese, Michael. In EMBO reports, p. e55432. 2022.
  • G6b-B regulates an essential step in megakaryocyte maturation. Becker, Isabelle C.; Nagy, Zoltan; Manukjan, Georgi; Haffner-Luntzer, Melanie; Englert, Maximilian; Heib, Tobias; Vögtle, Timo; Gross, Carina; Bharti, Richa; Dietrich, Sascha; Mott, Kristina; Heck, Johannes; Stegmaier, Sebastian; Baranowsky, Anke; Schinke, Thorsten; Schlegel, Nicolas; Heckel, Tobias; Stegner, David; Pleines, Irina; Ignatius, Anita; Schulze, Harald; Nieswandt, Bernhard. In Blood Advances, 6(10), pp. 3155–3161. American Society of Hematology, 2022.
  • Type 1 conventional dendritic cells maintain and guide the differentiation of precursors of exhausted T~cells in distinct cellular niches. Dähling, Sabrina; Mansilla, Ana Maria; Knöpper, Konrad; Grafen, Anika; Utzschneider, Daniel T.; Ugur, Milas; Whitney, Paul G.; Bachem, Annabell; Arampatzi, Panagiota; Imdahl, Fabian; Kaisho, Tsuneyasu; Zehn, Dietmar; Klauschen, Frederick; Garbi, Natalio; Kallies, Axel; Saliba, Antoine-Emmanuel; Gasteiger, Georg; Bedoui, Sammy; Kastenmüller, Wolfgang. In Immunity, 55(4), pp. 656–670.e8. Elsevier BV, 2022.
  • Spacer prioritization in CRISPR–Cas9 immunity is enabled by the leader RNA. Liao, Chunyu; Sharma, Sahil; Svensson, Sarah L.; Kibe, Anuja; Weinberg, Zasha; Alkhnbashi, Omer S.; Bischler, Thorsten; Backofen, Rolf; Caliskan, Neva; Sharma, Cynthia M.; Beisel, Chase L. In Nature Microbiology. 2022.
  • Liraglutide + PYY3-36 Combination Therapy Mimics Effects of Roux-en-Y Bypass on Early NAFLD Whilst Lacking-Behind in Metabolic Improvements. Metzner, Valentin; Herzog, Gloria; Heckel, Tobias; Bischler, Thorsten; Hasinger, Julia; Otto, Christoph; Fassnacht, Martin; Geier, Andreas; Seyfried, Florian; Dischinger, Ulrich. In Journal of Clinical Medicine, 11(3), p. 753. MDPI AG, 2022.
  • Dynamics of monocyte-derived macrophage diversity in experimental myocardial infarction. Rizzo, Giuseppe; Gropper, Julius; Piollet, Marie; Vafadarnejad, Ehsan; Rizakou, Anna; Bandi, Sourish Reddy; Arampatzi, Panagiota; Krammer, Tobias; DiFabion, Nina; Dietrich, Oliver; Arias-Loza, Anahi Paula; Prinz, Marco; Mack, Matthias; Schlepckow, Kai; Haass, Christian; Silvestre, Jean Sébastien; Zernecke, Alma; Saliba, Antoine Emmanuel; Cochain, Clément. In Cardiovascular Research. Oxford University Press (OUP), 2022.
  • Neurodegeneration by α-synuclein-specific T cells in AAV-A53T-α-synuclein Parkinson’s disease mice. Karikari, Akua A.; McFleder, Rhonda L.; Ribechini, Eliana; Blum, Robert; Bruttel, Valentin; Knorr, Susanne; Gehmeyr, Mona; Volkmann, Jens; Brotchie, Jonathan M.; Ahsan, Fadhil; Haack, Beatrice; Monoranu, Camelia-Maria; Keber, Ursula; Yeghiazaryan, Rima; Pagenstecher, Axel; Heckel, Tobias; Bischler, Thorsten; Wischhusen, Jörg; Koprich, James B.; Lutz, Manfred B.; Ip, Chi Wang. In Brain, Behavior, and Immunity, 101, pp. 194–210. Elsevier BV, 2022.
  • Genome-wide scan for potential CD4+ T-cell vaccine candidates in Candida auris by exploiting reverse vaccinology and evolutionary information. Gupta, Shishir K; Osmanoglu, Özge; Minocha, Rashmi; Bandi, Sourish Reddy; Bencurova, Elena; Srivastava, Mugdha; Dandekar, Thomas. In Frontiers in Medicine, 9, p. 1008527. 2022.
  • Helicobacter pylori shows tropism to gastric differentiated pit cells dependent on urea chemotaxis. Aguilar, Carmen; Pauzuolis, Mindaugas; Pompaiah, Malvika; Vafadarnejad, Ehsan; Arampatzi, Panagiota; Fischer, Mara; Narres, Dominik; Neyazi, Mastura; Kayisoglu, Özge; Sell, Thomas; Blüthgen, Nils; Morkel, Markus; Wiegering, Armin; Germer, Christoph-Thomas; Kircher, Stefan; Rosenwald, Andreas; Saliba, Antoine-Emmanuel; Bartfeld, Sina. In Nature Communications, 13(1), p. 5878. 2022.
  • Temperature and livestock grazing trigger transcriptome responses in bumblebees along an elevational gradient. Brenzinger, Kristof; Maihoff, Fabienne; Peters, Marcell K.; Schimmer, Leonie; Bischler, Thorsten; Classen, Alice. In iScience, 25(10). 2022.
  • Eine Einzelzell-RNA-Sequenzierung identifiziert Metabolismus und CD52 als neue Angriffspunkte in Ibrutinib-persistenten Mantelzelllymphomzellen. Fuhr, Viktoria; Vafadarnejad, Ehsan; Dietrich, Oliver; Arampatzi, Panagiota; Riedel, Angela; Saliba, Antoine-Emmanuel; Rosenwald, Andreas; Rauert-Wunderlich, Hilka. In Die Pathologie. Springer Science and Business Media LLC, 2022.
  • Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+ stromal cell subsets. Pezoldt, Joern; Wiechers, Carolin; Zou, Mangge; Litovchenko, Maria; Biocanin, Marjan; Beckstette, Michael; Sitnik, Katarzyna; Palatella, Martina; van Mierlo, Guido; Chen, Wanze; Gardeux, Vincent; Floess, Stefan; Ebel, Maria; Russeil, Julie; Arampatzi, Panagiota; Vafardanejad, Ehsan; Saliba, Antoine-Emmanuel; Deplancke, Bart; Huehn, Jochen. In Nature Communications, 13(1). Springer Science and Business Media LLC, 2022.
2021[ to top ]
  • Accumulation of cytotoxic T cells in the aged CNS leads to axon degeneration and contributes to cognitive and motor decline. Groh, Janos; Knöpper, Konrad; Arampatzi, Panagiota; Yuan, Xidi; Lößlein, Lena; Saliba, Antoine-Emmanuel; Kastenmüller, Wolfgang; Martini, Rudolf. In Nature Aging, 1(4), pp. 357–367. Springer Science and Business Media LLC, 2021.
  • Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment. Fuhr, Viktoria; Vafadarnejad, Ehsan; Dietrich, Oliver; Arampatzi, Panagiota; Riedel, Angela; Saliba, Antoine-Emmanuel; Rosenwald, Andreas; Rauert-Wunderlich, Hilka. In International Journal of Molecular Sciences, 22(5), p. 2276. MDPI AG, 2021.
  • The healing myocardium mobilizes a distinct B-cell subset through a CXCL13-CXCR5-dependent mechanism. Heinrichs, Margarete; Ashour, DiyaaElDin; Siegel, Johanna; Büchner, Lotte; Wedekind, Georg; Heinze, Katrin G; Arampatzi, Panagiota; Saliba, Antoine-Emmanuel; Cochain, Clement; Hofmann, Ulrich; Frantz, Stefan; Ramos, Gustavo Campos. In Cardiovascular Research, 117(13), pp. 2664–2676. Oxford University Press (OUP), 2021.
  • Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9. Jiao, Chunlei; Sharma, Sahil; Dugar, Gaurav; Peeck, Natalia L.; Bischler, Thorsten; Wimmer, Franziska; Yu, Yanying; Barquist, Lars; Schoen, Christoph; Kurzai, Oliver; Sharma, Cynthia M.; Beisel, Chase L. In Science, 372(6545), pp. 941–948. American Association for the Advancement of Science, 2021.
  • Fibromyalgia vs small fiber neuropathy: diverse keratinocyte transcriptome signature. Karl, Franziska; Bischler, Thorsten; Egenolf, Nadine; Evdokimov, Dimitar; Heckel, Tobias; Üçeyler, Nurcan. In PAIN, 162, pp. 2569–2577. 2021.
  • Alveolar Regeneration in COVID-19 Patients: A Network Perspective. Gupta, SK; Srivastava, M; Minocha, R; Akash, A; Dangwal, S; Dandekar, T. In International Journal of Molecular Sciences, 22(20), p. 11279. 2021.
  • Homozygous BCMA gene deletion in response to anti-BCMA CAR T cells in a patient with multiple myeloma. Vià, Matteo C. Da; Dietrich, Oliver; Truger, Marietta; Arampatzi, Panagiota; Duell, Johannes; Heidemeier, Anke; Zhou, Xiang; Danhof, Sophia; Kraus, Sabrina; Chatterjee, Manik; Meggendorfer, Manja; Twardziok, Sven; Goebeler, Maria-Elisabeth; Topp, Max S.; Hudecek, Michael; Prommersberger, Sabrina; Hege, Kristen; Kaiser, Shari; Fuhr, Viktoria; Weinhold, Niels; Rosenwald, Andreas; Erhard, Florian; Haferlach, Claudia; Einsele, Hermann; Kortüm, K. Martin; Saliba, Antoine-Emmanuel; Rasche, Leo. In Nature Medicine, 27(4), pp. 616–619. Springer Science and Business Media LLC, 2021.
  • Homeostatic calcium fluxes, ER calcium release, SOCE, and calcium oscillations in cultured astrocytes are interlinked by a small calcium toolkit. Schulte, Annemarie; Bieniussa, Linda; Gupta, Rohini; Samtleben, Samira; Bischler, Thorsten; Doering, Kristina; Sodmann, Philipp; Rittner, Heike; Blum, Robert. In Cell Calcium, 101, p. 102515. Elsevier BV, 2021.
  • Terminally Differentiated CD4+ T Cells Promote Myocardial Inflammaging. Delgobo, Murilo; Heinrichs, Margarete; Hapke, Nils; Ashour, DiyaaElDin; Appel, Marc; Srivastava, Mugdha; Heckel, Tobias; Spyridopoulos, Ioakim; Hofmann, Ulrich; Frantz, Stefan; Ramos, Gustavo Campos. In Frontiers in Immunology, 12. Frontiers Media SA, 2021.
  • Effector differentiation downstream of lineage commitment in ILC1s is driven by Hobit across tissues. Friedrich, Christin; Taggenbrock, Renske L. R. E.; Doucet-Ladevèze, Rémi; Golda, Gosia; Moenius, Rebekka; Arampatzi, Panagiota; Kragten, Natasja A. M.; Kreymborg, Katharina; de Agüero, Mercedes Gomez; Kastenmüller, Wolfgang; Saliba, Antoine-Emmanuel; Grün, Dominic; van Gisbergen, Klaas P. J. M.; Gasteiger, Georg. In Nature Immunology, 22(10), pp. 1256–1267. Springer Science and Business Media LLC, 2021.
  • The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR–Cas immune systems. Campa, Aroa Rey; Smith, Leah M; Hampton, Hannah G; Sharma, Sahil; Jackson, Simon A; Bischler, Thorsten; Sharma, Cynthia M; Fineran, Peter C. In Nucleic Acids Research, 49(16), pp. 9508–9525. 2021.
  • Opposing Wnt signals regulate cervical squamocolumnar homeostasis and emergence of metaplasia. Chumduri, Cindrilla; Gurumurthy, Rajendra Kumar; Berger, Hilmar; Dietrich, Oliver; Kumar, Naveen; Koster, Stefanie; Brinkmann, Volker; Hoffmann, Kirstin; Drabkina, Marina; Arampatzi, Panagiota; Son, Dajung; Klemm, Uwe; Mollenkopf, Hans-Joachim; Herbst, Hermann; Mangler, Mandy; Vogel, Jörg; Saliba, Antoine-Emmanuel; Meyer, Thomas F. In Nature Cell Biology, 23(2), pp. 184–197. Springer Science and Business Media LLC, 2021.
  • MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT. Santos, Sara Correia; Bischler, Thorsten; Westermann, Alexander J.; Vogel, Jörg. In Cell Reports, 34(5), p. 108722. Elsevier BV, 2021.
  • Roux-en-Y Gastric Bypass and Caloric Restriction but Not Gut Hormone-Based Treatments Profoundly Impact the Hypothalamic Transcriptome in Obese Rats. Dischinger, Ulrich; Heckel, Tobias; Bischler, Thorsten; Hasinger, Julia; Königsrainer, Malina; Schmitt-Böhrer, Angelika; Otto, Christoph; Fassnacht, Martin; Seyfried, Florian; Hankir, Mohammed Khair. In Nutrients, 14(1), p. 116. MDPI AG, 2021.
2020[ to top ]
  • The Influence of Met Receptor Level on {HGF}-Induced Glycolytic Reprogramming in Head and Neck Squamous Cell Carcinoma. Boschert, Verena; Klenk, Nicola; Abt, Alexander; Raman, Sudha Janaki; Fischer, Markus; Brands, Roman C.; Seher, Axel; Linz, Christian; Müller-Richter, Urs D. A.; Bischler, Thorsten; Hartmann, Stefan. In International Journal of Molecular Sciences, 21(2), p. 471. {MDPI} {AG}, 2020.
  • Single-cell transcriptomic profiling maps monocyte/macrophage transitions after myocardial infarction in mice. Rizzo, Giuseppe; Vafadarnejad, Ehsan; Arampatzi, Panagiota; Silvestre, Jean-Sebastien; Zernecke, Alma; Saliba, Antoine-Emmanuel; Cochain, Clement. In bioRxiv. Cold Spring Harbor Laboratory, 2020.
  • Dynamics of Cardiac Neutrophil Diversity in Murine Myocardial Infarction. Vafadarnejad, Ehsan; Rizzo, Giuseppe; Krampert, Laura; Arampatzi, Panagiota; Arias-Loza, Paula Anahi; Nazzal, Yara; Rizakou, Anna; Knochenhauer, Tim; Bandi, Sourish Reddy; Nugroho, Vallery Audy; Schulz, Dirk JJ; Roesch, Melanie; Alayrac, Paul; Vilar, Jos{{é}}; Silvestre, Jean-S{{é}}bastien; Zernecke, Alma; Saliba, Antoine-Emmanuel; Cochain, Clement. In Circulation Research. Ovid Technologies (Wolters Kluwer Health), 2020.
  • {IL}-12 from endogenous {cDC}1, and not vaccine {DC}, is required for Th1 induction. Ashour, DiyaaElDin; Arampatzi, Panagiota; Pavlovic, Vladimir; Förstner, Konrad U.; Kaisho, Tsuneyasu; Beilhack, Andreas; Erhard, Florian; Lutz, Manfred B. In {JCI} Insight, 5(10). American Society for Clinical Investigation, 2020.
  • Improved bacterial {RNA}-seq by Cas9-based depletion of ribosomal {RNA} reads. Prezza, Gianluca; Heckel, Tobias; Dietrich, Sascha; Homberger, Christina; Westermann, Alexander J; Vogel, Jörg. In {RNA}, p. rna.075945.120. Cold Spring Harbor Laboratory, 2020.
  • Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two-component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies. Esken, Jens; Goris, Tobias; Gadkari, Jennifer; Bischler, Thorsten; Förstner, Konrad U.; Sharma, Cynthia M.; Diekert, Gabriele; Schubert, Torsten. In {MicrobiologyOpen}. Wiley, 2020.
  • A Repeat-Associated Small {RNA} Controls the Major Virulence Factors of Helicobacter pylori. Eisenbart, Sara K.; Alzheimer, Mona; Pernitzsch, Sandy R.; Dietrich, Sascha; Stahl, Stephanie; Sharma, Cynthia M. In Molecular Cell. Elsevier {BV}, 2020.
  • Integrative functional genomics decodes herpes simplex virus 1. Whisnant, Adam W.; Jürges, Christopher S.; Hennig, Thomas; Wyler, Emanuel; Prusty, Bhupesh; Rutkowski, Andrzej J.; L’hernault, Anne; Djakovic, Lara; Göbel, Margarete; Döring, Kristina; Menegatti, Jennifer; Antrobus, Robin; Matheson, Nicholas J.; Künzig, Florian W. H.; Mastrobuoni, Guido; Bielow, Chris; Kempa, Stefan; Liang, Chunguang; Dandekar, Thomas; Zimmer, Ralf; Landthaler, Markus; Grässer, Friedrich; Lehner, Paul J.; Friedel, Caroline C.; Erhard, Florian; Dölken, Lars. In Nature Communications, 11(1), p. 2038-. 2020.
  • The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition. Bauriedl, Saskia; Gerovac, Milan; Heidrich, Nadja; Bischler, Thorsten; Barquist, Lars; Vogel, Jörg; Schoen, Christoph. In Nature Communications, 11(1), p. 2823-. 2020.
2019[ to top ]
  • Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq. Laass, Sebastian; Monzon, Vivian A.; Kliemt, Jana; Hammelmann, Matthias; Pfeiffer, Friedhelm; Förstner, Konrad U.; Soppa, Jörg. In PLOS ONE, 14(4), pp. 1–24. Public Library of Science, 2019.
  • Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing. Chihara, K; Bischler, T; Barquist, L; Monzon, V A; Noda, N; Vogel, J; Tsuneda, S. In mSystems, 4(6). 2019.
  • Efficient depletion of ribosomal RNA for RNA sequencing in planarians. Kim, Iana V.; Ross, Eric J.; Dietrich, Sascha; Döring, Kristina; Sánchez Alvarado, Alejandro; Kuhn, Claus-D. In BMC Genomics, 20(1), p. 909. 2019.
  • Cognate {Nonlytic} {Interactions} between {CD}8+ {T} {Cells} and {Breast} {Cancer} {Cells} {Induce} {Cancer} {Stem} {Cell}–like {Properties}. Stein, Roland G.; Ebert, Stefan; Schlahsa, Laura; Scholz, Claus J.; Braun, Matthias; Hauck, Petra; Horn, Evi; Monoranu, Camelia-Maria; Thiemann, Vincent J.; Wustrow, Michael P.; Häusler, Sebastian F.; Barrio, Itsaso Montalbán del; Stüber, Tanja N.; Wölfl, Matthias; Dietl, Johannes; Rosenwald, Andreas; Diessner, Joachim E.; Wöckel, Achim; Wischhusen, Jörg. In Cancer Research, 79(7), pp. 1507–1519. 2019.
  • Integrative functional genomics decodes herpes simplex virus 1. Whisnant, Adam W.; J{ü}rges, Christopher S.; Hennig, Thomas; Wyler, Emanuel; Prusty, Bhupesh; Rutkowski, Andrzej J; L{\textquoteright}hernault, Anne; G{ö}bel, Margarete; D{ö}ring, Kristina; Menegatti, Jennifer; Antrobus, Robin; Matheson, Nicholas J.; K{ü}nzig, Florian W.H.; Mastrobuoni, Guido; Bielow, Chris; Kempa, Stefan; Chunguang, Liang; Dandekar, Thomas; Zimmer, Ralf; Landthaler, Markus; Gr{ä}sser, Friedrich; Lehner, Paul J.; Friedel, Caroline C.; Erhard, Florian; D{ö}lken, Lars. In bioRxiv. Cold Spring Harbor Laboratory, 2019.
  • {MicroRNA} expression correlates with disease recurrence and overall survival in oral squamous cell carcinoma. Moratin, Julius; Hartmann, Stefan; Brands, Roman C.; Horn, Dominik; Fuchs, Andreas; Mutzbauer, Grit; Seher, Axel; Scholz, Claus; Müller-Richter, Urs D.A.; Linz, Christian. In Journal of Cranio-Maxillofacial Surgery, 47(3), pp. 523–529. Elsevier {BV}, 2019.
  • The identification of patient-specific mutations reveals dual pathway activation in most patients with melanoma and activated receptor tyrosine kinases in {BRAF}/{NRAS} wild-type melanomas. Appenzeller, Silke; Gesierich, Anja; Thiem, Alexander; Hufnagel, Anita; Jessen, Christina; Kneitz, Hermann; Regensburger, Martina; Schmidt, Cornelia; Zirkenbach, Vanessa; Bischler, Thorsten; Schilling, Bastian; Siedel, Claudia; Goebeler, Maria-Elisabeth; Houben, Roland; Schrama, David; Gehrig, Andrea; Rost, Simone; Maurus, Katja; Bargou, Ralf; Rosenwald, Andreas; Schartl, Manfred; Goebeler, Matthias; Meierjohann, Svenja. In Cancer, 125(4), pp. 586–600. 2019.
  • The small non-coding {RNA} {RsaE} influences extracellular matrix composition in {Staphylococcus} epidermidis biofilm communities. Schoenfelder, Sonja M. K.; Lange, Claudia; Prakash, Srinivasa Abishek; Marincola, Gabriella; Lerch, Maike F.; Wencker, Freya D. R.; Förstner, Konrad U.; Sharma, Cynthia M.; Ziebuhr, Wilma. In PLOS Pathogens, 15(3), p. e1007618. 2019.
  • The {Major} {RNA}-{Binding} {Protein} {ProQ} {Impacts} {Virulence} {Gene} {Expression} in {Salmonella} enterica {Serovar} {Typhimurium}. Westermann, Alexander J.; Venturini, Elisa; Sellin, Mikael E.; Förstner, Konrad U.; Hardt, Wolf-Dietrich; Vogel, Jörg. In mBio, 10(1), pp. e02504–18. 2019.
  • Hierarchy of mono- and biallelic {TP}53 alterations in multiple myeloma cell fitness. Munawar, Umair; Rasche, Leo; Müller, Nicole; Vogt, Cornelia; Da-Via, Matteo; Haertle, Larissa; Arampatzi, Panagiota; Dietrich, Sascha; Roth, Markus; Garitano-Trojaola, Andoni; Steinhardt, Maximilian Johannes; Strifler, Susanne; Gallardo, Miguel; Martinez-Lopez, Joaquin; Bargou, Ralf C.; Heckel, Tobias; Einsele, Hermann; Stühmer, Thorsten; Kortüm, K. Martin; Barrio, Santiago. In Blood, 134(10), pp. 836–840. 2019.
  • {RAL} {GTPases} mediate multiple myeloma cell survival and are activated independently of oncogenic {RAS}. Seibold, Marcel; Stühmer, Thorsten; Kremer, Nadine; Mottok, Anja; Scholz, Claus-Jürgen; Schlosser, Andreas; Leich, Ellen; Holzgrabe, Ulrike; Brünnert, Daniela; Barrio, Santiago; Kortüm, K. Martin; Solimando, Antonio G.; Chatterjee, Manik; Einsele, Hermann; Rosenwald, Andreas; Bargou, Ralf C.; Steinbrunn, Torsten. In Haematologica, p. haematol.2019.223024. Ferrata Storti Foundation (Haematologica), 2019.
  • Identification of Cholecystokinin by Genome-Wide Profiling as Potential Mediator of Serotonin-Dependent Behavioral Effects of Maternal Separation in the Amygdala. Weidner, Magdalena T.; Lardenoije, Roy; Eijssen, Lars; Mogavero, Floriana; Groodt, Lilian P. M. T. De; Popp, Sandy; Palme, Rupert; Förstner, Konrad U.; Strekalova, Tatyana; Steinbusch, Harry W. M.; Schmitt-Böhrer, Angelika G.; Glennon, Jeffrey C.; Waider, Jonas; van den Hove, Daniel L. A.; Lesch, Klaus-Peter. In Frontiers in Neuroscience, 13. Frontiers Media {SA}, 2019.
  • Contribution of {LTi} and {TH}17 cells to {B} cell aggregate formation in the central nervous system in a mouse model of multiple sclerosis. Schropp, Verena; Rohde, Jörn; Rovituso, Damiano M.; Jabari, Samir; Bharti, Richa; Kuerten, Stefanie. In Journal of Neuroinflammation, 16(1), p. 111. 2019.
  • Time-resolved single-cell transcriptomics uncovers dynamics of cardiac neutrophil diversity in murine myocardial infarction. Vafadarnejad, Ehsan; Rizzo, Giuseppe; Krampert, Laura; Arampatzi, Panagiota; Nugroho, Vallery Audy; Schulz, Dirk; Roesch, Melanie; Alayrac, Paul; Vilar, Jose; Silvestre, Jean-S{é}bastien; Zernecke, Alma; Saliba, Antoine-Emmanuel; Cochain, Cl{é}ment. In bioRxiv. Cold Spring Harbor Laboratory, 2019.
  • {scSLAM}-seq reveals core features of transcription dynamics in single cells. Erhard, Florian; Baptista, Marisa A. P.; Krammer, Tobias; Hennig, Thomas; Lange, Marius; Arampatzi, Panagiota; Jürges, Christopher S.; Theis, Fabian J.; Saliba, Antoine-Emmanuel; Dölken, Lars. In Nature, 571(7765), pp. 419–423. Springer Science and Business Media {LLC}, 2019.
  • Sensory profiles and immune-related expression patterns of patients with and without neuropathic pain after peripheral nerve lesion. Held, Melissa; Karl, Franziska; Vlckova, Eva; Rajdova, Aneta; Escolano-Lozano, Fabiola; Stetter, Christian; Bharti, Richa; Förstner, Konrad U.; Leinders, Mathias; Dušek, Ladislav; Birklein, Frank; Bednarik, Josef; Sommer, Claudia; Üçeyler, Nurcan. In {PAIN}, 160(10), pp. 2316–2327. Ovid Technologies (Wolters Kluwer Health), 2019.
2018[ to top ]
  • Panel {Sequencing} {Shows} {Recurrent} {Genetic} {FAS} {Alterations} in {Primary} {Cutaneous} {Marginal} {Zone} {Lymphoma}. Maurus, Katja; Appenzeller, Silke; Roth, Sabine; Kuper, Jochen; Rost, Simone; Meierjohann, Svenja; Arampatzi, Panagiota; Goebeler, Matthias; Rosenwald, Andreas; Geissinger, Eva; Wobser, Marion. In Journal of Investigative Dermatology, 138(7), pp. 1573–1581. 2018.
  • {CRISPR} {RNA}-{Dependent} {Binding} and {Cleavage} of {Endogenous} {RNAs} by the {Campylobacter} jejuni {Cas}9. Dugar, Gaurav; Leenay, Ryan T.; Eisenbart, Sara K.; Bischler, Thorsten; Aul, Belinda U.; Beisel, Chase L.; Sharma, Cynthia M. In Molecular Cell, 69(5), pp. 893–905.e7. 2018.
  • Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. Pezoldt, Joern; Pasztoi, Maria; Zou, Mangge; Wiechers, Carolin; Beckstette, Michael; Thierry, Guilhem R.; Vafadarnejad, Ehsan; Floess, Stefan; Arampatzi, Panagiota; Buettner, Manuela; Schweer, Janina; Fleissner, Diana; Vital, Marius; Pieper, Dietmar H.; Basic, Marijana; Dersch, Petra; Strowig, Till; Hornef, Mathias; Bleich, Andr{{é}}; Bode, Ulrike; Pabst, Oliver; Baj{{é}}noff, Marc; Saliba, Antoine-Emmanuel; Huehn, Jochen. In Nature Communications, 9(1). Springer Science and Business Media {LLC}, 2018.
  • Explorative results from multistep screening for potential genetic risk loci of Alzheimer’s disease in the longitudinal VITA study cohort. Scholz, Claus-J{ü}rgen; Weber, Heike; Jungwirth, Susanne; Danielczyk, Walter; Reif, Andreas; Tragl, Karl-Heinz; Fischer, Peter; Riederer, Peter; Deckert, J{ü}rgen; Gr{ü}nblatt, Edna. In Journal of Neural Transmission, 125(1), pp. 77–87. 2018.
  • {RNase} {E} cleavage shapes the transcriptome of {Rhodobacter} sphaeroides and strongly impacts phototrophic growth. Förstner, Konrad U.; Reuscher, Carina M.; Haberzettl, Kerstin; Weber, Lennart; Klug, Gabriele. In Life Science Alliance, 1(4), p. e201800080. 2018.
  • Post-transcriptional gene regulation by an {Hfq}-independent small {RNA} in {Caulobacter} crescentus. Fröhlich, Kathrin S.; Förstner, Konrad U.; Gitai, Zemer. In Nucleic Acids Research, 46(20), pp. 10969–10982. 2018.
  • Genome organization and {DNA} accessibility control antigenic variation in trypanosomes. Müller, Laura S. M.; Cosentino, Ra{{ú}}l O.; Förstner, Konrad U.; Guizetti, Julien; Wedel, Carolin; Kaplan, Noam; Janzen, Christian J.; Arampatzi, Panagiota; Vogel, Jörg; Steinbiss, Sascha; Otto, Thomas D.; Saliba, Antoine-Emmanuel; Sebra, Robert P.; Siegel, T. Nicolai. In Nature, 563(7729), pp. 121–125. Springer Science and Business Media {LLC}, 2018.
  • A New Bioactive Compound From the Marine Sponge-Derived Streptomyces sp. {SBT}348 Inhibits Staphylococcal Growth and Biofilm Formation. Balasubramanian, Srikkanth; Skaf, Joseph; Holzgrabe, Ulrike; Bharti, Richa; Förstner, Konrad U.; Ziebuhr, Wilma; Humeida, Ute H.; Abdelmohsen, Usama R.; Oelschlaeger, Tobias A. In Frontiers in Microbiology, 9. Frontiers Media {SA}, 2018.
  • A {Novel} {Mechanism} of {Inactivating} {Antibacterial} {Nitro} {Compounds} in the {Human} {Pathogen} {Staphylococcus} aureus by {Overexpression} of a {NADH}-{Dependent} {Flavin} {Nitroreductase}. El-Hossary, Ebaa M.; Förstner, Konrad U.; François, Patrice; Baud, Damien; Streker, Karin; Schrenzel, Jacques; Ohlsen, Knut; Holzgrabe, Ulrike. In Antimicrobial Agents and Chemotherapy, 62(2), pp. e01510–17. 2018.
  • {hnRNP} {R} and its main interactor, the noncoding {RNA} 7SK, coregulate the axonal transcriptome of motoneurons. Briese, Michael; Saal-Bauernschubert, Lena; Ji, Changhe; Moradi, Mehri; Ghanawi, Hanaa; Uhl, Michael; Appenzeller, Silke; Backofen, Rolf; Sendtner, Michael. In Proceedings of the National Academy of Sciences, 115(12), pp. E2859-E2868. 2018.
  • Clinical implications of fracture-associated vascular damage in extremity and pelvic trauma. Gilbert, F.; Schneemann, C.; Scholz, C. J.; Kickuth, R.; Meffert, R. H.; Wildenauer, R.; Lorenz, U.; Kellersmann, R.; Busch, A. In BMC Musculoskeletal Disorders, 19(1), p. 404. 2018.
  • The {Probiotic} {Escherichia} coli {Strain} {Nissle} 1917 {Combats} {Lambdoid} {Bacteriophages} stx and λ. Bury, Susanne; Soundararajan, Manonmani; Bharti, Richa; von Bünau, Rudolf; Förstner, Konrad U.; Oelschlaeger, Tobias A. In Frontiers in Microbiology, 9. 2018.
  • Single-{Cell} {RNA}-{Seq} {Reveals} the {Transcriptional} {Landscape} and {Heterogeneity} of {Aortic} {Macrophages} in {Murine} {Atherosclerosis}. Cochain, Clément; Vafadarnejad, Ehsan; Arampatzi, Panagiota; Jaroslav, Pelisek; Winkels, Holger; Ley, Klaus; Wolf, Dennis; Saliba, Antoine-Emmanuel; Zernecke, Alma. In Circulation Research, p. CIRCRESAHA.117.312509. 2018.
  • Global {Maps} of {ProQ} {Binding} {In} {Vivo} {Reveal} {Target} {Recognition} via {RNA} {Structure} and {Stability} {Control} at {mRNA} 3′ {Ends}. Holmqvist, Erik; Li, Lei; Bischler, Thorsten; Barquist, Lars; Vogel, Jörg. In Molecular Cell, 70(5), pp. 971–982.e6. 2018.
  • Computational {Analysis} of {RNA}–{Protein} {Interactions} via {Deep} {Sequencing}. Li, Lei; Förstner, Konrad U.; Chao, Yanjie. In Transcriptome {Data} {Analysis}, pp. 171–182. Humana Press, New York, NY, 2018.
2017[ to top ]
  • Differential effects of {FTY}720 on the {B} cell compartment in a mouse model of multiple sclerosis. Bail, Kathrin; Notz, Quirin; Rovituso, Damiano M.; Schampel, Andrea; Wunsch, Marie; Koeniger, Tobias; Schropp, Verena; Bharti, Richa; Scholz, Claus-Juergen; Foerstner, Konrad U.; Kleinschnitz, Christoph; Kuerten, Stefanie. In Journal of Neuroinflammation, 14, p. 148. 2017.
  • The regulation of tetraspanin 8 gene expression—{A} potential new mechanism in the pathogenesis of bipolar disorder. Schartner, Christoph; Scholz, Claus-Jürgen; Weber, Heike; Post, Antonia; Freudenberg, Florian; Grünewald, Lena; Reif, Andreas. In American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 174(7), pp. 740–750. 2017.
  • Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches. Krohn-Molt, Ines; Alawi, Malik; Förstner, Konrad U.; Wiegandt, Alena; Burkhardt, Lia; Indenbirken, Daniela; Thieß, Melanie; Grundhoff, Adam; Kehr, Julia; Tholey, Andreas; Streit, Wolfgang R. In Frontiers in Microbiology, 8. Frontiers Media {SA}, 2017.
  • The glucocorticoid receptor in monocyte-derived macrophages is critical for cardiac infarct repair and remodeling. Galuppo, Paolo; Vettorazzi, Sabine; Hövelmann, Julian; Scholz, Claus-Jürgen; Tuckermann, Jan Peter; Bauersachs, Johann; Fraccarollo, Daniela. In The FASEB Journal, 31(11), pp. 5122–5132. 2017.
  • {GT}‐rich promoters can drive {RNA} pol {II} transcription and deposition of {H}2A.{Z} in {African} trypanosomes. Wedel, Carolin; Förstner, Konrad U.; Derr, Ramona; Siegel, T. Nicolai. In The EMBO Journal, 36(17), pp. 2581–2594. 2017.
  • Nimodipine fosters remyelination in a mouse model of multiple sclerosis and induces microglia-specific apoptosis. Schampel, Andrea; Volovitch, Oleg; Koeniger, Tobias; Scholz, Claus-Jürgen; Jörg, Stefanie; Linker, Ralf A.; Wischmeyer, Erhard; Wunsch, Marie; Hell, Johannes W.; Ergün, Süleyman; Kuerten, Stefanie. In Proceedings of the National Academy of Sciences, 114(16), pp. E3295-E3304. 2017.
  • In {Vivo} {Cleavage} {Map} {Illuminates} the {Central} {Role} of {RNase} {E} in {Coding} and {Non}-coding {RNA} {Pathways}. Chao, Yanjie; Li, Lei; Girodat, Dylan; Förstner, Konrad U.; Said, Nelly; Corcoran, Colin; Śmiga, Michał; Papenfort, Kai; Reinhardt, Richard; Wieden, Hans-Joachim; Luisi, Ben F.; Vogel, Jörg. In Molecular Cell, 65(1), pp. 39–51. 2017.
  • The enteric nervous system is a potential autoimmune target in multiple sclerosis. Wunsch, Marie; Jabari, Samir; Voussen, Barbara; Enders, Michael; Srinivasan, Shanthi; Cossais, François; Wedel, Thilo; Boettner, Martina; Schwarz, Anna; Weyer, Linda; Göcer, Oktay; Schroeter, Michael; Maeurer, Mathias; Woenckhaus, Matthias; Pollok, Karolin; Radbruch, Helena; Klotz, Luisa; Scholz, Claus-Jürgen; Nickel, Joachim; Friebe, Andreas; Addicks, Klaus; Ergün, Süleyman; Lehmann, Paul V.; Kuerten, Stefanie. In Acta Neuropathologica, 134(2), pp. 281–295. 2017.
  • {APRICOT}: an integrated computational pipeline for the sequence-based identification and characterization of {RNA}-binding proteins. Sharan, Malvika; Förstner, Konrad U.; Eulalio, Ana; Vogel, Jörg. In Nucleic Acids Research, 45(11), pp. e96-e96. 2017.
  • Transcription {Profiling} of {Bacillus} subtilis {Cells} {Infected} with {AR}9, a {Giant} {Phage} {Encoding} {Two} {Multisubunit} {RNA} {Polymerases}. Lavysh, Daria; Sokolova, Maria; Slashcheva, Marina; Förstner, Konrad U.; Severinov, Konstantin. In mBio, 8(1), pp. e02041–16. 2017.
  • Hypermethylation of the non-imprinted maternal MEG3 and paternal MEST alleles is highly variable among normal individuals. Haertle, Larissa; Maierhofer, Anna; Böck, Julia; Lehnen, Harald; Böttcher, Yvonne; Blüher, Matthias; Schorsch, Martin; Potabattula, Ramya; El Hajj, Nady; Appenzeller, Silke; Haaf, Thomas. In PLOS ONE, 12(8), pp. 1–16. Public Library of Science, 2017.
  • An {RpoHI}-{Dependent} {Response} {Promotes} {Outgrowth} after {Extended} {Stationary} {Phase} in the {Alphaproteobacterium} {Rhodobacter} sphaeroides. Remes, B.; Rische-Grahl, T.; Müller, K. M. H.; Förstner, K. U.; Yu, Sung-Huan; Weber, L.; Jäger, A.; Peuser, V.; Klug, G. In Journal of Bacteriology, 199(14), pp. e00249–17. 2017.
  • {dRNA}-seq transcriptional profiling of the {FK}506 biosynthetic gene cluster in Streptomyces tsukubaensis {NRRL}18488 and general analysis of the transcriptome. Bauer, Judith S.; Fillinger, Sven; Förstner, Konrad; Herbig, Alexander; Jones, Adam C.; Flinspach, Katrin; Sharma, Cynthia; Gross, Harald; Nieselt, Kay; Apel, Alexander K. In {RNA} Biology, 14(11), pp. 1617–1626. Informa {UK} Limited, 2017.
  • Insights into {Microalga} and {Bacteria} {Interactions} of {Selected} {Phycosphere} {Biofilms} {Using} {Metagenomic}, {Transcriptomic}, and {Proteomic} {Approaches}. Krohn-Molt, Ines; Alawi, Malik; Förstner, Konrad U.; Wiegandt, Alena; Burkhardt, Lia; Indenbirken, Daniela; Thieß, Melanie; Grundhoff, Adam; Kehr, Julia; Tholey, Andreas; Streit, Wolfgang R. In Frontiers in Microbiology, 8. 2017.
  • Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis. van Hulzen, Kimm J.E.; Scholz, Claus J.; Franke, Barbara; Ripke, Stephan; Klein, Marieke; McQuillin, Andrew; Sonuga-Barke, Edmund J.; Kelsoe, John R.; Land{{é}}n, Mikael; Andreassen, Ole A.; Lesch, Klaus-Peter; Weber, Heike; Faraone, Stephen V.; Arias-Vasquez, Alejandro; Reif, Andreas. In Biological Psychiatry, 82(9), pp. 634–641. Elsevier {BV}, 2017.
  • Pan-{Raf} co-operates with {PI}3K-dependent signalling and critically contributes to myeloma cell survival independently of mutated {RAS}. Müller, E.; Bauer, S.; Stühmer, T.; Mottok, A.; Scholz, C.-J.; Steinbrunn, T.; Brünnert, D.; Brandl, A.; Schraud, H.; Kreßmann, S.; Beilhack, A.; Rosenwald, A.; Bargou, R. C.; Chatterjee, M. In Leukemia, 31(4), pp. 922–933. 2017.
  • {sRNA}154 a newly identified regulator of nitrogen fixation in {Methanosarcina} mazei strain {Gö}1. Prasse, Daniela; Förstner, Konrad U.; Jäger, Dominik; Backofen, Rolf; Schmitz, Ruth A. In RNA Biology, 14(11), pp. 1544–1558. 2017.